Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs139504018 chr9:36118437 T/TA 0 178 25.47 24.5 2.93 KM Plot
PCPG rs139506738 chr16:71550454 GA/G 0 175 24.52 27.22 3.17 KM Plot
PCPG rs139571273 chr11:64147398 A/ATGTG 0.000323 173 26.57 13.5 28.3 KM Plot
PCPG rs139689955 chr2:118681013 G/A 1.6E-5 178 25.17 30.93 11.65 KM Plot
PCPG rs1398130 chr2:107246587 A/T 0.000368 178 26.92 23.53 25.87 KM Plot
PCPG rs1398131 chr2:107246789 C/T 0.000213 178 26.57 23.53 25.87 KM Plot
PCPG rs1398132 chr2:107246998 A/T 0.000369 178 25.87 20.37 26.92 KM Plot
PCPG rs1398133 chr2:107250616 G/T 0.000212 178 26.57 21.95 25.87 KM Plot
PCPG rs139820948 chr16:89815624 TTTGTTG/T 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs139879453 chr13:37539442 A/AAAGGAAAAAAAAGGAAGTCT 0.0004 173 4.17 24.1 25.87 KM Plot
PCPG rs139902838 chr13:54174502 G/C 0.000222 178 25.67 20.17 3.17 KM Plot
PCPG rs139926838 chr7:158840851 TCTAATCAA/T 0.000217 174 25.53 19.87 41.87 KM Plot
PCPG rs139950857 chr13:114149205 GT/G 5.27E-12 176 24.23 29.57 3.32 KM Plot
PCPG rs1399557 chr3:80572574 G/T 6.02E-5 178 19.53 24.53 27.2 KM Plot
PCPG rs139978339 chr16:89828786 GAGCCTAGGAGTTTGACACC/G 0.000179 176 25.87 20.17 36.37 KM Plot